Transcript: lnc-NPHP4-64:1

Basic information

LNCipedia transcript ID: lnc-NPHP4-64:1 
LNCipedia gene ID: lnc-NPHP4-64
Ensembl Gene ID: ENSG00000284616
Ensembl Transcript ID: ENST00000641871
Location (hg19): chr1:5361988-5367454
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1225 bp
Exons: 4
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641871.1
Alternative gene names: ENSG00000284616.1; AL139823.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -229.5664 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPHP4-64:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CLSTN1-64:1
5.1 lnc-CLSTN1-64:1
5.2 lnc-NPHP4-64:1