Transcript: lnc-NPR2-1:1

Basic information

LNCipedia transcript ID: lnc-NPR2-1:1 
LNCipedia gene ID: lnc-NPR2-1
Ensembl Gene ID: ENSG00000227388
Ensembl Transcript ID: ENST00000574939
Location (hg19): chr9:35772160-35780595
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574939.1; RP11-112J3.16-002; OTTHUMT00000437935.1; NONHSAT130974
Alternative gene names: ENSG00000227388.2; RP11-112J3.16; OTTHUMG00000019884.2; AL133410.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.1366 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPR2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPR2-1:1
4.0 lnc-NPR2-1:1
4.1 lnc-NPR2-1:1
5.0 lnc-NPR2-1:1
5.1 lnc-RECK-8:2
5.2 lnc-NPR2-1:1