Transcript: lnc-NPY5R-1:4

Basic information

LNCipedia transcript ID: lnc-NPY5R-1:4 
LNCipedia gene ID: lnc-NPY5R-1
Location (hg19): chr4:164038257-164041789
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1656 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008312; NONHSAT099050
Alternative gene names: XLOC_003765; linc-NPY5R-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.107 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPY5R-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPY5R-1:4
3.1 lnc-NPY5R-1:4
4.0 lnc-NPY5R-1:4
4.1 lnc-NPY5R-1:4
5.0 lnc-NPY5R-1:4
5.1 lnc-TMEM144-27:4
5.2 lnc-NPY5R-1:4