Transcript: lnc-NR1D1-1:3

Basic information

LNCipedia transcript ID: lnc-NR1D1-1:3 
LNCipedia gene ID: lnc-NR1D1-1
Location (hg19): chr17:38277006-38278105
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 727 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026069; NONHSAT053522
Alternative gene names: XLOC_012467; linc-NR1D1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.9704 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR1D1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR1D1-1:3
3.1 lnc-NR1D1-1:3
4.0 lnc-NR1D1-1:3
4.1 lnc-NR1D1-1:3
5.0 lnc-NR1D1-1:3
5.1 lnc-NR1D1-1:3
5.2 lnc-NR1D1-1:3