Transcript: lnc-NR1D2-6:1

Basic information

LNCipedia transcript ID: lnc-NR1D2-6:1 
LNCipedia gene ID: lnc-NR1D2-6
RefSeq ID: NR_121667
Location (hg19): chr3:24192815-24231447
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 643 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121667; NR_121667.1
Alternative gene names: LOC101927854


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -153.758 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR1D2-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NR1D2-6:1
4.0 lnc-NR1D2-6:1
4.1 lnc-NR1D2-6:1
5.0 lnc-NR1D2-6:1
5.1 lnc-CMC1-28:1
5.2 lnc-NR1D2-6:1