Transcript: lnc-NR3C1-1:1

Basic information

LNCipedia transcript ID: lnc-NR3C1-1:1 
LNCipedia gene ID: lnc-NR3C1-1
Ensembl Gene ID: ENSG00000249429
Ensembl Transcript ID: ENST00000340585
Location (hg19): chr5:142869420-142910915
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009795; ENST00000340585; ENST00000340585.6; CTD-2050E21.1-001; OTTHUMT00000371900.1; NONHSAT104351
Alternative gene names: XLOC_005037; linc-NR3C1; ENSG00000249429; CTD-2050E21.1; ENSG00000249429.1; OTTHUMG00000163174.1; AC016598.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.6852 non-coding 
CPAT coding probability 5.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR3C1-1:1 no no no no

Available literature

  1. Lucafo (2015), Long noncoding RNA GAS5: a novel marker involved in glucocorticoid response., Curr. Mol. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR3C1-1:1
3.1 lnc-NR3C1-1:1
4.0 lnc-NR3C1-1:1
4.1 lnc-NR3C1-1:1
5.0 lnc-NR3C1-1:1
5.1 lnc-DIAPH1-37:1
5.2 lnc-NR3C1-1:1