Transcript: lnc-NR5A2-1:2

Basic information

LNCipedia transcript ID: lnc-NR5A2-1:2 
LNCipedia gene ID: lnc-NR5A2-1
Ensembl Gene ID: ENSG00000230623
Ensembl Transcript ID: ENST00000634596
Location (hg19): chr1:200380928-200444641
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1768 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000061; NONHSAT008697; ENST00000634596.1
Alternative gene names: XLOC_000515; linc-CAMSAP1L1-2; ENSG00000230623.3; RP11-469A15.2; ENSG00000230623.4; AC104461.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.4991 non-coding 
CPAT coding probability 13.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR5A2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR5A2-1:2
3.1 lnc-NR5A2-1:2
4.0 lnc-NR5A2-1:2
4.1 lnc-NR5A2-1:2
5.0 lnc-NR5A2-1:2
5.1 lnc-ADORA1-75:6
5.2 lnc-NR5A2-1:2