Transcript: lnc-NR5A2-1:3

Basic information

LNCipedia transcript ID: lnc-NR5A2-1:3 
LNCipedia gene ID: lnc-NR5A2-1
Ensembl Gene ID: ENSG00000230623
Ensembl Transcript ID: ENST00000427825
Location (hg19): chr1:200443048-200447421
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 507 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000367; ENST00000427825; ENST00000427825.1; RP11-469A15.2-001; OTTHUMT00000086874.1; NONHSAT008700
Alternative gene names: XLOC_000515; linc-CAMSAP1L1-2; ENSG00000230623; RP11-469A15.2; ENSG00000230623.2; OTTHUMG00000035719.1; ENSG00000230623.3; ENSG00000230623.4; AC104461.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.5209 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NR5A2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR5A2-1:3
3.1 lnc-NR5A2-1:3
4.0 lnc-NR5A2-1:3
4.1 lnc-NR5A2-1:3
5.0 lnc-NR5A2-1:3
5.1 lnc-ADORA1-75:14
5.2 lnc-NR5A2-1:3