Transcript: lnc-NREP-7:4

Basic information

LNCipedia transcript ID: lnc-NREP-7:4 
LNCipedia gene ID: lnc-NREP-7
Location (hg19): chr5:111443143-111445080
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1938 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000080892.1|FTMT21800008028.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -25.9053 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NREP-7:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C5orf13-7:4
5.0 lnc-C5orf13-7:4
5.1 lnc-LOX-131:4
5.2 lnc-NREP-7:4