Transcript: lnc-NSFL1C-1:1

Basic information

LNCipedia transcript ID: lnc-NSFL1C-1:1 
LNCipedia gene ID: lnc-NSFL1C-1
Location (hg19): chr20:1433765-1454487
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 752 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000553571.1; RP4-776F14.3-001; OTTHUMT00000411901.1; NONHSAT078113
Alternative gene names: ENSG00000258950.1; RP4-776F14.3; OTTHUMG00000171146.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.819 non-coding 
CPAT coding probability 34.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSFL1C-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NSFL1C-1:1
4.0 lnc-NSFL1C-1:1
4.1 lnc-NSFL1C-1:1
5.0 lnc-NSFL1C-1:1
5.1 lnc-RNF24-60:1
5.2 lnc-NSFL1C-1:1