Transcript: lnc-NSUN6-2:1

Basic information

LNCipedia transcript ID: lnc-NSUN6-2:1 
LNCipedia gene ID: lnc-NSUN6-2
Location (hg19): chr10:18940195-18948196
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 392 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456217.1; RP11-139J15.2-001; OTTHUMT00000047079.1; NONHSAT011647
Alternative gene names: ENSG00000152487.5; RP11-139J15.2; OTTHUMG00000017766.1; ENSG00000152487.6; ARL5B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.3423 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSUN6-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NSUN6-2:1
4.0 lnc-NSUN6-2:1
4.1 lnc-NSUN6-2:1
5.0 lnc-NSUN6-2:1
5.1 lnc-MPP7-115:2
5.2 lnc-NSUN6-2:1