Transcript: lnc-NT5DC2-2:1

Basic information

LNCipedia transcript ID: lnc-NT5DC2-2:1 
LNCipedia gene ID: lnc-NT5DC2-2
Location (hg19): chr3:52539055-52539424
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 370 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr3_4559_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 90.5295 coding 
CPAT coding probability 23.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NT5DC2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NT5DC2-2:1
4.0 lnc-NT5DC2-2:1
4.1 lnc-NT5DC2-2:1
5.0 lnc-NT5DC2-2:1
5.1 lnc-ACTR8-28:1
5.2 lnc-NT5DC2-2:1