Transcript: lnc-NT5E-1:1

Basic information

LNCipedia transcript ID: lnc-NT5E-1:1 
LNCipedia gene ID: lnc-NT5E-1
Location (hg19): chr6:86340107-86340841
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421594.1; RP1-3J17.3-001; OTTHUMT00000041399.1; NONHSAT113846
Alternative gene names: ENSG00000236016.1; RP1-3J17.3; OTTHUMG00000015142.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.9214 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NT5E-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NT5E-1:1
4.0 lnc-NT5E-1:1
4.1 lnc-NT5E-1:1
5.0 lnc-NT5E-1:1
5.1 lnc-ZNF292-32:2
5.2 lnc-NT5E-1:1