Transcript: lnc-NTSR2-2:1

Basic information

LNCipedia transcript ID: lnc-NTSR2-2:1 
LNCipedia gene ID: lnc-NTSR2-2
Ensembl Gene ID: ENSG00000230790
Ensembl Transcript ID: ENST00000431500
Location (hg19): chr2:11881123-11885427
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 561 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431500.2; AC012456.4-001; OTTHUMT00000324103.2; NONHSAT069193
Alternative gene names: ENSG00000230790.2; AC012456.4; OTTHUMG00000151836.2; AC012456.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.7166 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTSR2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NTSR2-2:1
4.0 lnc-NTSR2-2:1
4.1 lnc-NTSR2-2:1
5.0 lnc-NTSR2-2:1
5.1 lnc-RAD51AP2-71:6
5.2 lnc-NTSR2-2:1