Transcript: lnc-NUDT4B-1:3

Basic information

LNCipedia transcript ID: lnc-NUDT4B-1:3 
LNCipedia gene ID: lnc-NUDT4B-1
Location (hg19): chr1:143687152-143713485
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 670 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000457439.1; BX284650.2-005; OTTHUMT00000037965.1; NONHSAT005743
Alternative gene names: ENSG00000231734.3; BX284650.2; OTTHUMG00000013626.1; ENSG00000231734.4; RP6-206I17.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 130.7731 coding 
CPAT coding probability 3.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NUDT4B-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP3-377D14.1.1-1:2
4.0 lnc-RP3-377D14.1.1-1:2
4.1 lnc-RP3-377D14.1.1-1:2
5.0 lnc-RP3-377D14.1.1-1:2
5.1 lnc-FCGR1A-20:3
5.2 lnc-NUDT4B-1:3