Transcript: lnc-NUDT4B-1:9

Basic information

LNCipedia transcript ID: lnc-NUDT4B-1:9 
LNCipedia gene ID: lnc-NUDT4B-1
Location (hg19): chr1:147887350-147901125
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 994 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000426101; ENST00000426101.1; RP11-495P10.1-002; OTTHUMT00000039536.1; NONHSAT006112; ENST00000426101.5
Alternative gene names: ENSG00000231551; RP11-495P10.1; ENSG00000231551.2; OTTHUMG00000014085.1; ENSG00000231551.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.5008 non-coding 
CPAT coding probability 16.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDT4B-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR89B-7:1
3.1 lnc-GPR89B-7:1
4.0 lnc-GPR89B-7:1
4.1 lnc-GPR89B-7:1
5.0 lnc-GPR89B-7:1
5.1 lnc-FCGR1A-20:9
5.2 lnc-NUDT4B-1:9