Transcript: lnc-NUPL2-2:1

Basic information

LNCipedia transcript ID: lnc-NUPL2-2:1 
LNCipedia gene ID: lnc-NUPL2-2
Location (hg19): chr7:23245632-23247664
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2033 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000413042.2; AC005082.12-001; OTTHUMT00000327184.2; NONHSAT119517
Alternative gene names: ENSG00000226816.2; AC005082.12; OTTHUMG00000152653.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.5584 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUPL2-2:1 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUPL2-1:1
4.0 lnc-NUPL2-2:1
4.1 lnc-NUPL2-2:1
5.0 lnc-NUPL2-2:1
5.1 lnc-SNX10-61:3
5.2 lnc-NUPL2-2:1