Transcript: lnc-NUTM2B-1:1

Basic information

LNCipedia transcript ID: lnc-NUTM2B-1:1 
LNCipedia gene ID: lnc-NUTM2B-1
Location (hg19): chr10:81420645-81430911
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 448 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017843; ENST00000479920; ENST00000479920.1; RP11-506M13.3-001; OTTHUMT00000048977.1; NONHSAT015135
Alternative gene names: XLOC_008528; linc-C10orf57-5; ENSG00000244733; RP11-506M13.3; ENSG00000244733.1; OTTHUMG00000018574.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.4915 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUTM2B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM22B-1:1
3.1 lnc-FAM22B-1:2
4.0 lnc-FAM22B-1:2
4.1 lnc-FAM22B-1:2
5.0 lnc-FAM22B-1:2
5.1 lnc-MTRNR2L5-245:1
5.2 lnc-NUTM2B-1:1