Transcript: lnc-NWD2-3:5

Basic information

LNCipedia transcript ID: lnc-NWD2-3:5 
LNCipedia gene ID: lnc-NWD2-3
Ensembl Gene ID: ENSG00000261761
Ensembl Transcript ID: ENST00000624352
Location (hg19): chr4:37019877-37020578
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 702 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563967.1; RP11-103J17.2-002; OTTHUMT00000431337.1; NONHSAT147282; ENST00000624352.1
Alternative gene names: ENSG00000261761.1; RP11-103J17.2; OTTHUMG00000175975.1; ENSG00000261761.3; AL136537.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.456 non-coding 
CPAT coding probability 3.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NWD2-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1239-3:3
4.0 lnc-KIAA1239-3:3
4.1 lnc-KIAA1239-3:3
5.0 lnc-KIAA1239-3:3
5.1 lnc-GABRB1-84:5
5.2 lnc-NWD2-3:5