Transcript: lnc-NXPE2-2:1

Basic information

LNCipedia transcript ID: lnc-NXPE2-2:1 
LNCipedia gene ID: lnc-NXPE2-2
Ensembl Gene ID: ENSG00000256972
Ensembl Transcript ID: ENST00000545593
Location (hg19): chr11:115204296-115210981
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 330 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545593; ENST00000545593.1; AP000462.3-001; OTTHUMT00000398927.1; NONHSAT024302
Alternative gene names: ENSG00000256972; AP000462.3; ENSG00000256972.1; OTTHUMG00000168234.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -519.2247 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPE2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-2:1
3.1 lnc-FAM55B-2:1
4.0 lnc-FAM55B-2:1
4.1 lnc-FAM55B-2:1
5.0 lnc-FAM55B-2:1
5.1 lnc-PTS-50:1
5.2 lnc-NXPE2-2:1