Transcript: lnc-OAF-4:11

Basic information

LNCipedia transcript ID: lnc-OAF-4:11 
LNCipedia gene ID: lnc-OAF-4
Location (hg19): chr11:119817137-119821850
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019502; NONHSAT024695
Alternative gene names: XLOC_009303; linc-OAF-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.42 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OAF-4:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP000679.2.1-2:1
3.1 lnc-AP000679.2.1-2:1
4.0 lnc-AP000679.2.1-2:1
4.1 lnc-CTD-2523D13.1.1-4:11
5.0 lnc-CTD-2523D13.1.1-4:11
5.1 lnc-HINFP-12:11
5.2 lnc-OAF-4:11