Transcript: lnc-OPLAH-1:4

Basic information

LNCipedia transcript ID: lnc-OPLAH-1:4 
LNCipedia gene ID: lnc-OPLAH-1
Ensembl Gene ID: ENSG00000255224
Ensembl Transcript ID: ENST00000524499
Location (hg19): chr8:145132905-145134168
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1264 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524499.1; CTD-3065J16.9-001; OTTHUMT00000384064.1; NONHSAT129692
Alternative gene names: ENSG00000255224.1; CTD-3065J16.9; OTTHUMG00000165436.1; AC109322.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.7388 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OPLAH-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHARPIN-2:1
4.0 lnc-SHARPIN-2:1
4.1 lnc-SHARPIN-2:1
5.0 lnc-SHARPIN-2:1
5.1 lnc-TMEM249-26:4
5.2 lnc-OPLAH-1:4