Transcript: lnc-OPN4-1:6

Basic information

LNCipedia transcript ID: lnc-OPN4-1:6 
LNCipedia gene ID: lnc-OPN4-1
Location (hg19): chr10:88281717-88289781
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2398 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227896.2|ENCT00000048135.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.9504 non-coding 
CPAT coding probability 6.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OPN4-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-OPN4-1:6
5.0 lnc-OPN4-1:6
5.1 lnc-SMC3-327:6
5.2 lnc-OPN4-1:6