Transcript: lnc-OPRD1-1:3

Basic information

LNCipedia transcript ID: lnc-OPRD1-1:3 
LNCipedia gene ID: lnc-OPRD1-1
Location (hg19): chr1:29194087-29197779
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1747 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT001997; ENST00000443593.2
Alternative gene names: ENSG00000226852.2; RP1-212P9.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4999 non-coding 
CPAT coding probability 32.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OPRD1-1:3 yes no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OPRD1-1:3
4.0 lnc-OPRD1-1:3
4.1 lnc-OPRD1-1:3
5.0 lnc-OPRD1-1:3
5.1 lnc-RAB42-5:3
5.2 lnc-OPRD1-1:3