Transcript: lnc-OPRK1-3:12

Basic information

LNCipedia transcript ID: lnc-OPRK1-3:12 
LNCipedia gene ID: lnc-OPRK1-3
Ensembl Gene ID: ENSG00000237807
Ensembl Transcript ID: ENST00000426023
Location (hg19): chr8:54427731-54436491
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2387 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00014514; ENST00000426023; ENST00000426023.1; RP11-400K9.4-001; OTTHUMT00000377988.1; NONHSAT126597
Alternative gene names: XLOC_007085; linc-OPRK1-4; ENSG00000237807; RP11-400K9.4; ENSG00000237807.3; OTTHUMG00000164264.1; AC022034.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6415 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OPRK1-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1H-1:1
3.1 lnc-ATP6V1H-1:1
4.0 lnc-ATP6V1H-1:1
4.1 lnc-OPRK1-3:12
5.0 lnc-OPRK1-3:12
5.1 lnc-IMPAD1-57:6
5.2 lnc-OPRK1-3:12