Transcript: lnc-OR13C4-3:1

Basic information

LNCipedia transcript ID: lnc-OR13C4-3:1 
LNCipedia gene ID: lnc-OR13C4-3
Location (hg19): chr9:106124234-106192174
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015858; ENST00000421507; ENST00000421507.1; RP11-436F21.1-001; OTTHUMT00000053468.1; NONHSAT133779
Alternative gene names: XLOC_007811; linc-GRIN3A-2; ENSG00000226566; RP11-436F21.1; ENSG00000226566.1; OTTHUMG00000020400.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.2037 non-coding 
CPAT coding probability 17.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR13C4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR13C4-3:1
3.1 lnc-OR13C4-3:1
4.0 lnc-OR13C4-3:1
4.1 lnc-OR13C4-3:1
5.0 lnc-OR13C4-3:1
5.1 lnc-ERP44-38:1
5.2 lnc-OR13C4-3:1