Transcript: lnc-OR1J1-1:1

Basic information

LNCipedia transcript ID: lnc-OR1J1-1:1 
LNCipedia gene ID: lnc-OR1J1-1
Location (hg19): chr9:125163249-125165185
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 297 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015879; ENST00000439471; ENST00000439471.1; RP11-542K23.10-001; OTTHUMT00000053940.1; NONHSAT134582
Alternative gene names: XLOC_007846; linc-RBM18; ENSG00000233616; RP11-542K23.10; ENSG00000233616.1; OTTHUMG00000020610.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR1J1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR1J1-1:1
3.1 lnc-OR1J1-1:1
4.0 lnc-OR1J1-1:1
4.1 lnc-OR1J1-1:1
5.0 lnc-OR1J1-1:1
5.1 lnc-TTLL11-8:1
5.2 lnc-OR1J1-1:1