Transcript: lnc-OR1J1-2:1

Basic information

LNCipedia transcript ID: lnc-OR1J1-2:1 
LNCipedia gene ID: lnc-OR1J1-2
Location (hg19): chr9:125139438-125142168
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2056 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3848_chr9:125139437-125142168_heart
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 172.1004 coding 
CPAT coding probability 18.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR1J1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR1J1-2:1
4.0 lnc-OR1J1-2:1
4.1 lnc-OR1J1-2:1
5.0 lnc-OR1J1-2:1
5.1 lnc-TTLL11-7:1
5.2 lnc-OR1J1-2:1