Transcript: lnc-OR2C3-1:3

Basic information

LNCipedia transcript ID: lnc-OR2C3-1:3 
LNCipedia gene ID: lnc-OR2C3-1
Ensembl Gene ID: ENSG00000236817
Ensembl Transcript ID: ENST00000435333
Location (hg19): chr1:247728941-247804156
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 538 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435333.1; RP11-978I15.10-001; OTTHUMT00000097754.1; NONHSAT010784; ENST00000435333.5
Alternative gene names: ENSG00000236817.1; RP11-978I15.10; OTTHUMG00000040653.1; ENSG00000236817.5; AL606804.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.3544 non-coding 
CPAT coding probability 6.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR2C3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR13G1-1:1
4.0 lnc-OR13G1-1:1
4.1 lnc-OR13G1-1:1
5.0 lnc-OR13G1-1:1
5.1 lnc-LYPD8-14:1
5.2 lnc-OR2C3-1:3