Transcript: lnc-OR2J1-2:2

Basic information

LNCipedia transcript ID: lnc-OR2J1-2:2 
LNCipedia gene ID: lnc-OR2J1-2
Ensembl Gene ID: ENSG00000277661
Ensembl Transcript ID: ENST00000623334
Location (hg19): chr6:29003798-29044256
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 466 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623334.3
Alternative gene names: ENSG00000277661.4; XXbac-BPG258E24.10; AL662791.5; AL662791.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 79.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR2J1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-OR2J1-2:2
4.1 lnc-OR2J1-2:2
5.0 lnc-OR2J1-2:2
5.1 lnc-OR2I1P-28:2
5.2 lnc-OR2J1-2:2