Transcript: lnc-OR2J3-7:1

Basic information

LNCipedia transcript ID: lnc-OR2J3-7:1 
LNCipedia gene ID: lnc-OR2J3-7
Ensembl Gene ID: ENSG00000227206
Ensembl Transcript ID: ENST00000419702
Location (hg19): chr6:29091987-29096685
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011281; ENST00000419702; ENST00000419702.1; XXbac-BCX196D17.5-001; OTTHUMT00000193728.1; NONHSAT108512
Alternative gene names: XLOC_005228; linc-OR2J2; ENSG00000227206; XXbac-BCX196D17.5; ENSG00000227206.1; OTTHUMG00000085915.1; AL645937.4; AL645937.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.9758 non-coding 
CPAT coding probability 13.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR2J3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR2J3-1:1
3.1 lnc-OR2J3-7:1
4.0 lnc-OR2J3-7:1
4.1 lnc-OR2J3-7:1
5.0 lnc-OR2J3-7:1
5.1 lnc-OR2I1P-21:2
5.2 lnc-OR2J3-7:1