Transcript: lnc-OR4F16-15:3

Basic information

LNCipedia transcript ID: lnc-OR4F16-15:3 
LNCipedia gene ID: lnc-OR4F16-15
Location (hg19): chr1:677193-685396
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4860 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000416385; ENST00000416385.1; RP11-206L10.3-001; OTTHUMT00000006890.1; NONHSAT000109
Alternative gene names: ENSG00000235373; RP11-206L10.3; ENSG00000235373.1; OTTHUMG00000002407.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.0795 non-coding 
CPAT coding probability 3.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F16-15:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F16-2:2
3.1 lnc-OR4F16-3:2
4.0 lnc-OR4F16-3:2
4.1 lnc-OR4F16-3:2
5.0 lnc-OR4F16-3:2
5.1 lnc-CLSTN1-173:3
5.2 lnc-OR4F16-15:3