Transcript: lnc-OR4F29-3:12

Basic information

LNCipedia transcript ID: lnc-OR4F29-3:12 
LNCipedia gene ID: lnc-OR4F29-3
Ensembl Gene ID: ENSG00000241860
Ensembl Transcript ID: ENST00000490997
Location (hg19): chr1:142808-146831
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000439; ENST00000490997.1; RP11-34P13.12-002; OTTHUMT00000007036.1; NONHSAT000033; ENST00000490997.5
Alternative gene names: XLOC_000659; linc-ZNF692-5; ENSG00000241860.1; RP11-34P13.12; OTTHUMG00000002479.1; ENSG00000241860.2; RP11-34P13.13; ENSG00000241860.6; AL627309.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.8 non-coding 
CPAT coding probability 3.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM138A-3:2
3.1 lnc-FAM138A-3:2
4.0 lnc-FAM138A-3:2
4.1 lnc-FAM138A-3:2
5.0 lnc-FAM138A-3:2
5.1 lnc-CLSTN1-180:7
5.2 lnc-OR4F29-3:12