Transcript: lnc-OR4F29-3:6

Basic information

LNCipedia transcript ID: lnc-OR4F29-3:6 
LNCipedia gene ID: lnc-OR4F29-3
Location (hg19): chr1:164405-173864
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 972 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000466557; ENST00000466557.1; RP11-34P13.13-001; OTTHUMT00000007037.1; NONHSAT139822
Alternative gene names: ENSG00000239368; RP11-34P13.13; ENSG00000239368.1; OTTHUMG00000002480.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.2344 non-coding 
CPAT coding probability 6.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM138A-4:1
3.1 lnc-FAM138A-4:1
4.0 lnc-FAM138A-3:6
4.1 lnc-FAM138A-3:6
5.0 lnc-FAM138A-3:6
5.1 lnc-CLSTN1-180:1
5.2 lnc-OR4F29-3:6