Transcript: lnc-OR4F29-3:7

Basic information

LNCipedia transcript ID: lnc-OR4F29-3:7 
LNCipedia gene ID: lnc-OR4F29-3
Ensembl Gene ID: ENSG00000241860
Ensembl Transcript ID: ENST00000466557
Location (hg19): chr1:146386-173862
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1301 bp
Exons: 8
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT000034; ENST00000466557.2; ENST00000466557.6
Alternative gene names: ENSG00000241860.2; RP11-34P13.13; ENSG00000241860.6; AL627309.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.2344 non-coding 
CPAT coding probability 6.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138A-3:3
4.0 lnc-FAM138A-3:3
4.1 lnc-FAM138A-3:3
5.0 lnc-FAM138A-3:3
5.1 lnc-CLSTN1-180:2
5.2 lnc-OR4F29-3:7