Transcript: lnc-OR4F29-7:1

Basic information

LNCipedia transcript ID: lnc-OR4F29-7:1 
LNCipedia gene ID: lnc-OR4F29-7
RefSeq ID: NR_039983
Location (hg19): chr1:134773-140566
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5474 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT000027; NR_039983; NR_039983.2
Alternative gene names: LOC729737


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 142.9741 coding 
CPAT coding probability 99.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR4F29-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138A-2:3
4.0 lnc-FAM138A-2:3
4.1 lnc-FAM138A-2:3
5.0 lnc-FAM138A-2:3
5.1 lnc-CLSTN1-181:1
5.2 lnc-OR4F29-7:1