Transcript: lnc-OR4F29-7:3

Basic information

LNCipedia transcript ID: lnc-OR4F29-7:3 
LNCipedia gene ID: lnc-OR4F29-7
Ensembl Gene ID: ENSG00000239906
Ensembl Transcript ID: ENST00000493797
Location (hg19): chr1:139790-140339
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 323 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000437; ENST00000493797.1; RP11-34P13.14-001; OTTHUMT00000007038.1; NONHSAT139820
Alternative gene names: XLOC_000658; linc-ZNF692-6; ENSG00000239906.1; RP11-34P13.14; OTTHUMG00000002481.1; AL627309.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.9197 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM138A-2:1
3.1 lnc-FAM138A-2:1
4.0 lnc-FAM138A-2:1
4.1 lnc-FAM138A-2:1
5.0 lnc-FAM138A-2:1
5.1 lnc-CLSTN1-181:3
5.2 lnc-OR4F29-7:3