Transcript: lnc-OR4F4-1:2

Basic information

LNCipedia transcript ID: lnc-OR4F4-1:2 
LNCipedia gene ID: lnc-OR4F4-1
Ensembl Gene ID: ENSG00000259553
Ensembl Transcript ID: ENST00000559045
Location (hg19): chr15:102500051-102500785
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 423 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559045.1; AC140725.4-002; OTTHUMT00000417602.1; NONHSAT051707
Alternative gene names: ENSG00000259553.1; AC140725.4; OTTHUMG00000172274.1; ENSG00000259553.2; MIR1302-11; ENSG00000259553.3; ENSG00000259553.4; MIR1302-10; ENSG00000259553.5; AC140725.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.5814 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F4-1:2
4.0 lnc-OR4F4-1:2
4.1 lnc-OR4F4-1:2
5.0 lnc-OR4F4-1:2
5.1 lnc-CIB1-132:2
5.2 lnc-OR4F4-1:2