Transcript: lnc-OR4F5-7:2

Basic information

LNCipedia transcript ID: lnc-OR4F5-7:2 
LNCipedia gene ID: lnc-OR4F5-7
Ensembl Gene ID: ENSG00000236601
Ensembl Transcript ID: ENST00000412666
Location (hg19): chr1:453827-460465
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 426 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412666; ENST00000412666.1; RP4-669L17.2-001; OTTHUMT00000007987.2; NONHSAT000075
Alternative gene names: ENSG00000236601; RP4-669L17.2; ENSG00000236601.1; OTTHUMG00000002855.2; ENSG00000236601.2; AL732372.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 57.5079 non-coding 
CPAT coding probability 6.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR4F5-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F16-6:2
3.1 lnc-OR4F16-7:2
4.0 lnc-OR4F16-7:2
4.1 lnc-OR4F16-7:2
5.0 lnc-OR4F16-7:2
5.1 lnc-VAMP3-142:2
5.2 lnc-OR4F5-7:2