Transcript: lnc-OR4F5-7:4

Basic information

LNCipedia transcript ID: lnc-OR4F5-7:4 
LNCipedia gene ID: lnc-OR4F5-7
Ensembl Gene ID: ENSG00000236601
Ensembl Transcript ID: ENST00000635159
Location (hg19): chr5:180881341-180887335
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 994 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635159.1
Alternative gene names: ENSG00000236601.2; RP4-669L17.2; AL732372.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.6007 non-coding 
CPAT coding probability 5.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F5-7:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TRIM52-5:1
4.1 lnc-TRIM52-5:1
5.0 lnc-TRIM52-5:1
5.1 lnc-VAMP3-142:4
5.2 lnc-OR4F5-7:4