Transcript: lnc-OR4N4-1:7

Basic information

LNCipedia transcript ID: lnc-OR4N4-1:7 
LNCipedia gene ID: lnc-OR4N4-1
Location (hg19): chr15:22289623-22292225
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 399 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000558511.1; RP11-69H14.6-006; OTTHUMT00000417623.1; NONHSAT040718; ENST00000611139.1; ENST00000638987.1
Alternative gene names: ENSG00000259176.1; RP11-69H14.6; OTTHUMG00000172277.1; ENSG00000259176.5; ENSG00000284500.1; AC134980.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -195.9902 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4N4-1:7 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4N4-1:7
4.0 lnc-OR4N4-1:7
4.1 lnc-OR4N4-1:7
5.0 lnc-OR4N4-1:7
5.1 lnc-SNRPN-57:12
5.2 lnc-OR4N4-1:7