Transcript: lnc-OR51B4-3:2

Basic information

LNCipedia transcript ID: lnc-OR51B4-3:2 
LNCipedia gene ID: lnc-OR51B4-3
Location (hg19): chr11:5301819-5302228
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 410 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT017674
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.7901 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR51B4-3:2 no no no no

Available literature

  1. Kim (2007), Beta-globin intergenic transcription and histone acetylation dependent on an enhancer., Mol. Cell. Biol.
  2. Zhu (2007), A facilitated tracking and transcription mechanism of long-range enhancer function., Nucleic Acids Res.
  3. Haussecker (2005), Dicer-dependent turnover of intergenic transcripts from the human beta-globin gene cluster., Mol. Cell. Biol.
  4. Gribnau (2000), Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus., Mol. Cell
  5. Ashe (1997), Intergenic transcription and transinduction of the human beta-globin locus., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR51B4-3:2
4.0 lnc-OR51B4-3:2
4.1 lnc-OR51B4-3:2
5.0 lnc-OR51B4-3:2
5.1 lnc-OR52A1-4:2
5.2 lnc-OR51B4-3:2