Transcript: lnc-OR52H1-1:1

Basic information

LNCipedia transcript ID: lnc-OR52H1-1:1 
LNCipedia gene ID: lnc-OR52H1-1
Location (hg19): chr11:5593552-5646126
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 535 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000394793.2; AC015691.13-001; OTTHUMT00000257946.1; NONHSAT017684
Alternative gene names: ENSG00000239920.1; AC015691.13; OTTHUMG00000133694.1; AC015691.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.2965 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR52H1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR52H1-1:1
4.0 lnc-OR52H1-1:1
4.1 lnc-OR52H1-1:1
5.0 lnc-OR52H1-1:1
5.1 lnc-OR52A1-13:1
5.2 lnc-OR52H1-1:1