Transcript: lnc-OR6F1-1:2

Basic information

LNCipedia transcript ID: lnc-OR6F1-1:2 
LNCipedia gene ID: lnc-OR6F1-1
Location (hg19): chr1:247886259-247887063
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 491 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000426444.1; RP11-634B7.5-002; OTTHUMT00000099210.1; NONHSAT010794
Alternative gene names: ENSG00000239395.1; RP11-634B7.5; OTTHUMG00000041416.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 149.557 coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR6F1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR6F1-1:2
4.0 lnc-OR6F1-1:2
4.1 lnc-OR6F1-1:2
5.0 lnc-OR6F1-1:2
5.1 lnc-LYPD8-13:2
5.2 lnc-OR6F1-1:2