Transcript: lnc-OR9I1-1:1

Basic information

LNCipedia transcript ID: lnc-OR9I1-1:1 
LNCipedia gene ID: lnc-OR9I1-1
Ensembl Gene ID: ENSG00000255146
Ensembl Transcript ID: ENST00000526131
Location (hg19): chr11:57811582-57827610
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1890 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526131; ENST00000526131.1; RP11-659P15.1-001; OTTHUMT00000394471.1; NONHSAT021462
Alternative gene names: ENSG00000255146; RP11-659P15.1; ENSG00000255146.1; OTTHUMG00000167391.1; AP004247.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.5265 non-coding 
CPAT coding probability 15.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR9I1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR9I1-1:1
3.1 lnc-OR9I1-1:1
4.0 lnc-OR9I1-1:1
4.1 lnc-OR9I1-1:1
5.0 lnc-OR9I1-1:1
5.1 lnc-OR5M11-16:1
5.2 lnc-OR9I1-1:1