Transcript: lnc-OSR2-2:1

Basic information

LNCipedia transcript ID: lnc-OSR2-2:1 
LNCipedia gene ID: lnc-OSR2-2
Ensembl Gene ID: ENSG00000253532
Ensembl Transcript ID: ENST00000523226
Location (hg19): chr8:100131580-100132809
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 595 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523226.1; CTD-2340D6.1-001; OTTHUMT00000379829.1; NONHSAT127949
Alternative gene names: ENSG00000253532.1; CTD-2340D6.1; OTTHUMG00000164700.1; AC107909.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.9874 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OSR2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OSR2-2:1
4.0 lnc-OSR2-2:1
4.1 lnc-OSR2-2:1
5.0 lnc-OSR2-2:1
5.1 lnc-CA2-153:1
5.2 lnc-OSR2-2:1