Transcript: lnc-OTOL1-5:1

Basic information

LNCipedia transcript ID: lnc-OTOL1-5:1 
LNCipedia gene ID: lnc-OTOL1-5
Ensembl Gene ID: ENSG00000269888
Ensembl Transcript ID: ENST00000602890
Location (hg19): chr3:161146900-161147401
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 248 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT093018; ENST00000602890.1
Alternative gene names: ENSG00000269888.1; RP11-3P17.5; AC112491.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 49.8436 non-coding 
CPAT coding probability 8.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OTOL1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OTOL1-5:1
4.0 lnc-OTOL1-5:1
4.1 lnc-OTOL1-5:1
5.0 lnc-OTOL1-5:1
5.1 lnc-PPM1L-5:1
5.2 lnc-OTOL1-5:1