Transcript: lnc-OTOP1-6:2

Basic information

LNCipedia transcript ID: lnc-OTOP1-6:2 
LNCipedia gene ID: lnc-OTOP1-6
Location (hg19): chr4:3948487-3957148
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 899 bp
Exons: 7
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000281228.8
Alternative gene names: ENSG00000253917.3; AC226119.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.6779 non-coding 
CPAT coding probability 99.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OTOP1-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OTOP1-6:2
4.0 lnc-OTOP1-6:2
4.1 lnc-OTOP1-6:2
5.0 lnc-OTOP1-6:2
5.1 lnc-PSAPL1-37:3
5.2 lnc-OTOP1-6:2