Transcript: lnc-OTOP1-6:4

Basic information

LNCipedia transcript ID: lnc-OTOP1-6:4 
LNCipedia gene ID: lnc-OTOP1-6
Ensembl Gene ID: ENSG00000253917
Ensembl Transcript ID: ENST00000514073
Location (hg19): chr4:3916910-3957146
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT094900; ENST00000514073.1
Alternative gene names: ENSG00000253917.3; AC226119.5; ENSG00000253917.4; AC226119.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.4688 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OTOP1-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OTOP1-6:4
4.0 lnc-OTOP1-6:4
4.1 lnc-OTOP1-6:4
5.0 lnc-OTOP1-6:4
5.1 lnc-PSAPL1-37:4
5.2 lnc-OTOP1-6:4