Transcript: lnc-OTX2-8:1

Basic information

LNCipedia transcript ID: lnc-OTX2-8:1 
LNCipedia gene ID: lnc-OTX2-8
Ensembl Gene ID: ENSG00000259133
Ensembl Transcript ID: ENST00000556696
Location (hg19): chr14:57189855-57197253
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556696.1
Alternative gene names: ENSG00000259133.5; RP11-1085N6.3; AL161757.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.4084 non-coding 
CPAT coding probability 5.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OTX2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-1085N6.3.1-5:1
4.1 lnc-RP11-1085N6.3.1-5:1
5.0 lnc-RP11-1085N6.3.1-5:1
5.1 lnc-RTN1-35:1
5.2 lnc-OTX2-8:1